RNA-Seq Primer
This PowerPoint presentation provides a brief introduction to the different types of RNA-Seq evidence tracks (e.g. Bowtie, TopHat, Cufflinks) that are on the GEP UCSC Genome Browser.
Gene Annotation
Design and Use of RepeatMasker
Similar to the lecture notes on Repetitious DNA, this is a PowerPoint presentation given by Dr. Jeremy Buhler for the GEP faculty and TA workshops. This presentation covers the basics of RepeatMasker, as well as limitations of the program that students should be aware of.
Using BLAST for Genomic Sequence Annotation
Similar to the Lecture Notes on Alignment, this is a PowerPoint presentation given by Dr. Jeremy Buhler for the GEP faculty and TA workshops. This presentation covers the basics of alignment, essential for students to correctly interpret BLAST results.
Detecting and Interpreting Genetic Homology: Lecture Notes on Alignment
Notes from a lecture on sequence alignment given by Dr. Jeremy Buhler in the Bio 4342 course at WU. The lecture covers the theory behind BLAST as well as some of the potential problems and limitations of BLAST.
An Introduction to NCBI BLAST
This walkthrough serves as an introduction to key functionalities of NCBI BLAST.
Basics of BLAST
This PowerPoint presentation provides a brief introduction to the different kind of BLAST searches available.
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