This module illustrates the use of computational (e.g., blastn) and experimental (e.g., RAMPAGE, CAGE, RNA PolII ChIP-Seq) data to define the narrow and wide TSS search regions for genes with broad promoters.
Module TSS4: Annotation of Broad Transcription Start Sites
- Last Reviewed: August 19, 2024
- Last Updated: August 19, 2024
- Michael Foulk
- Created: August 22, 2018
- Curriculum Section: Gene Annotation
- Curriculum Type: Lesson with Exercises
- Target Audience: Beginning Student
- NIBLSE Competencies: C4, C5
- Topic Tags: Multiple Sequence Alignment, RNA PolII X-ChIP-Seq, RNA-Seq, TSS Search Region
- Tool Tags: BLAST, Multiz, UCSC Genome Browser