Dr. Susan Parrish (McDaniel College) developed a basic lecture and weblem exercise (found at the end of the lecture) on using ClustalW to generate multiple sequence alignments, phylograms, and cladograms. This lecture and exercise are given prior to beginning the GEP annotation projects. Students who submit their GEP annotation projects early are then asked to generate multiple sequence alignments and phylograms of the putative proteins encoded within their assigned contig or fosmid, compared to those related proteins encoded by other Drosophila species of interest to the GEP.
Archived Curriculum This curriculum is no longer being actively maintained by the GEP Curriculum Committee.
Generating Multiple Sequence Alignments with ClustalW
- Last Reviewed: August 14, 2020
- Last Updated: August 14, 2020
- Susan Parrish
- Created: April 3, 2011