This module illustrates how pairwise (blastn) and multiple sequence alignments can be used in conjunction with RNA-Seq data and the Short Match functionality of the UCSC Genome Browser to facilitate the TSS annotation of the Antp gene in D. eugracilis.
Module TSS2: Using Sequence Alignment to Identify a TSS
- Meg Laakso
- Created: February 17, 2018
- Last Reviewed: December 29, 2021
- Last Updated: December 29, 2021