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Pathways Project: Annotation Workflow

  • November 13, 2020August 11, 2021

The Annotation Workflow is a one page summary of the annotation protocol for the Pathways Project. This workflow provides an overview of the key analysis steps and bioinformatics tools for the annotation of a putative ortholog.

Workflow to Resolve Misassembly

  • August 15, 2020August 19, 2020

A flowchart that illustrates the key decisions and strategies when dealing with misassemblies that are caused by collapsed repeats.

Identify D. melanogaster Ortholog

  • August 15, 2020June 3, 2022

This decision tree illustrates the list of criteria that can be used to determine the putative D. melanogaster ortholog of a predicted gene.

GEP Annotation Workflow

  • August 15, 2020January 2, 2022

This workflow provides an overview of the key analysis steps and bioinformatics tools for the annotation of a predicted gene in the Drosophila F element GEP project.

TSS Annotation Workflow

  • August 15, 2020January 2, 2022

This workflow provides an overview of the key steps and recommended search parameters for the annotation of transcription start sites.

Annotating Splice Sites: Workflow

  • August 15, 2020January 2, 2022

A one-page summary/flowchart of the logic process for identifying appropriate splice sites when annotating.