Project Resource
Pathways Project: Annotation Report Exemplar
GEP students use the Annotation Report form to submit their annotation results for the Pathways Project. The Annotation Report Exemplar is provided as an example of a completed report.
Pathways Project: Annotation Report
GEP students will use the Report Form document to submit their annotation results for the Pathways Project. The Project Details Table handout will show students how to fill out the first page of the Annotation Report. The Report Form Exemplar is provided as an example of a completed report.
Pathways Project: Annotation Notebook D. pseudoobscura Homework Key
Students can apply what they learned in the Pathways Project: Annotation Walkthrough to construct a gene model for Rheb in D. pseudoobscura by completing the Pathways Project: Annotation Notebook. An answer key is provided to assist in checking the accuracy of the annotation and includes potential areas of confusion throughout.
Pathways Project: Annotation Notebook
The Pathways Annotation Notebook will help GEP students keep track of their work as they are annotating, and then they can use the notebook to fill out the report form. This notebook does not have to be submitted to GEP, it’s just an extra resource students might find helpful.
Common Finishing Errors
This PowerPoint presentation describes the common errors observed in student finishing projects.
Finishing Checklist
Students should complete all items on this checklist before submitting the project back to the GEP.
Strategies for Finishing Hybrid Assemblies
This document contains advice on the strategies students can use to resolve common problems they may encounter during sequence improvement.
Calling Additional Reads
Students will typically need to request additional sequencing reactions in order to improve the quality of an assembly. This document describes some of the key considerations that students should keep in mind when they design oligonucleotide primers.