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Southeast Regional Node Meeting – November 12, 2021

The GEP Southeast Regional Node held a virtual meeting on November 12, 2021, with 43 students and faculty in attendance,

Pacific Northwest Regional Node Meeting – November 7, 2021

The Pacific Northwest (PNW) Regional Node, which currently includes members from Oregon, Washington, and Idaho, held a virtual Regional Node

Texas and Oklahoma Regional Node Meeting November 5, 2021

TX/OK Regional Node Meeting – November 5, 2021

The Oklahoma Universities in the Texas/Oklahoma Regional Node held a node meeting at the Oklahoma Academies of Science Technical Meeting

Genomics Education Partnership (thegep.org) Summer Education Research Workshop The Assessment Committee is considering new education research questions and is planning a 5-day virtual summer workshop for GEP faculty interested in 1) professional development in education research and 2) collaborating on designing and conducting education research projects during the 2021/2022 academic year. The workshop will be facilitated by Professional-development for Emerging Education Researchers (PEER). Who: All interested GEP faculty members are welcome to attend What: Based on PEER curriculum Where: Virtual When: June 28 - July 2, 2021; 2 hrs/day How: Synchronous Add yourself to the Trello card (thegep.org/GEP-PEER) if you are interested in participating (free-as everything in GEP!) or want more information!

GEP PEER Education Research Workshop

To provide opportunities for professional development in Discipline-Based Education Research (DBER), GEP offered a week-long summer virtual workshop to the

Pie chart of the Annotation Errors for the Pathways Project Reconciliation Statistics during Summer 2021 Synteny 61.6% Splice site boundaries 4.8% Extra/missing exon(s) 2.1% Mislabeled/missing 6.8% Gene model missing 1.4% Off By 1 2.7% Submission error 19.9%

2021 Pathways GEP Summer Research Fellows

During Summer 2021, nine Summer Fellows from The University of Alabama and Oklahoma Christian University reconciled coding region annotation projects

New GEP Tools YouTube Video: Dot Plots and Protein Alignments

An introductory video on the analysis of dot plots and protein alignments, presented by GEP Virtual TA Rae Lucas, is

New GEP Tools YouTube Video: Using the RNA-Seq Tracks

A video describing RNA-Seq by GEP Virtual TA Christina Ray Santos is now available on the GEP’s YouTube Channel. We

F Element Project Reconciliation Statistics Fall 2020-Spring 2021 Gene model submission statistics: reconciled 848 gene models; approximately 75% of the submitted gene models were in congruence with the final gene models. Breakdown of annotation errors (n=232; note: some models have multiple annotation errors): The most common annotation error in the submitted gene models is the selection of incorrect splice site boundaries (24%) followed by start/stop codon error (18%), extra/missing exon (12%), missing pseudogene or retrogene (12%), gene model missing (9%), not the orthologous model (8%), mislabeled/missing isoform (6%), novel isoform (6%), and submission error (5%).

2021 F Element GEP Summer Research Fellows

During Summer 2021, five Summer Fellows from New Jersey City University (NJCU), Rutgers University, and Washington University in St. Louis

Supporting Student Well-Being Created Positive Learning Environment

Dr. Rivka Glaser, a GEP Member since 2016, was recently featured in the AAAS-IUSE “Lessons Learned During COVID-19” series. https://www.aaas-iuse.org/resource/supporting-student-well-being/

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