This document illustrates how students can apply the sequence improvement protocol described in the “Sequence Improvement Protocol for GEP Hybrid Assembly Projects” document to specific problems in a D. biarmipes sequence improvement project. Specifically, the walkthrough describes techniques for correcting consensus errors and for closing gaps.
Archived Curriculum
This curriculum is no longer being actively maintained by the GEP Curriculum Committee.
GEP Hybrid Assembly Walkthrough
- Last Reviewed: May 19, 2016
- Last Updated: May 19, 2016
- Chris Shaffer
- Created: May 19, 2016
- Curriculum Section: Sequence Improvement
- Curriculum Type: Walkthrough
- Topic Tags: Finishing Strategy, Hybrid Assembly, Inconsistent Mate Pair, Mononucleotide Run, Polymorphism, Sequence Quality
- Tool Tags: Consed