This module uses the placement of the Initiator (Inr) motif, TSS annotations produced by the Celniker group at modENCODE, and experimental data such as CAGE, RAMPAGE, and RNA Polymerase II X-ChIP-Seq data to characterize the promoter for the Antp gene in D. melanogaster.
Module TSS3: CAGE, RAMPAGE, and RNA Pol II X-ChIP-Seq
- Last Reviewed: August 19, 2024
- Last Updated: August 18, 2023
- Meg Laakso
- Created: February 17, 2018
- Curriculum Section: Gene Annotation, TSS Annotation
- Curriculum Type: Lesson with Exercises
- Target Audience: Beginning Student
- NIBLSE Competencies: C5
- Topic Tags: CAGE, Promoter Structure, RAMPAGE, RNA PolII X-ChIP-Seq, TSS Annotation
- Tool Tags: UCSC Genome Browser