Twelve undergraduate students shared their recent research annotating genes as part of the Pathways Project at the third semi-annual virtual Southeast Regional Node Meeting and research symposium on April 22, 2022. The event began with an engaging talk by Dr. Rebecca Varney, Postdoc at the University of California—Santa Barbara, on how gene annotation efforts can be especially helpful when working with non-model organisms.
The New York and New Jersey (NY/NJ) Node held a virtual Regional Node Meeting (RNM) on March 5, 2022, in which seven GEP members were in attendance. Dr. Nate Mortimer provided an introductory seminar on the Parasitoid Wasps Project which was followed by a walkthrough of all the project materials. Members learned how to sign-up for an annotation project, how to find the Genome Browser, which Browser tracks were important for the annotation and what types of evidence the tracks contain. Most importantly, members learned how to annotate genes without a good gene model from a closely related species. Overall, attendees thought it was a great way to get excited to implement this new project and teaching genomics.
The GEP Southeast Regional Node held a virtual meeting on November 12, 2021, with 43 students and faculty in attendance, representing colleges and universities from Alabama, Florida, Georgia, and Tennessee. Keynote speaker Dr. Sarthok Rahman, a postdoctoral researcher at The University of Alabama, discussed how bumblebees got their colors. His address described scales of life ranging from molecular to ecological, including aspects of epigenetics, gene mapping, signal transduction, developmental biology, convergent evolution, Müllerian mimicry, biogeography, and more. Dr. Sarthok’s presentation exemplified how high-quality genome annotations are useful for comparative genomics.
After the keynote address and ensuing discussion, the 30 undergraduates were divided into two breakout rooms, where they presented their research as five-minute talks. Students shared their challenges, progress, and results in reconciling, annotating coding sequences, and annotating promoter regions.
Students reported that the annotation projects have been a valuable introduction to the world of bioinformatics and participating in our Course-based Undergraduate Research Experience has helped them to make order and sense from overwhelming amounts of data. Faculty reported that it was interesting to hear a broad diversity of student talks.
The two-hour event continued a series of community-building Southeast Regional Node events. We look forward to seeing faculty and hearing from more students at the next meeting!
The Oklahoma Universities in the Texas/Oklahoma Regional Node held a node meeting at the Oklahoma Academies of Science Technical Meeting in Ada, OK at East Central University. Fifteen GEP students presented their annotation projects either in poster or oral formats. GEP students and faculty from East Central University and Oklahoma Christian University ate lunch together and shared experiences.
Dr. Nathan “Nate” Mortimer gave a scientific talk on the GEP’s Parasitoid Wasps Project he is the Project Leader for at the Texas/Oklahoma Regional Node Meeting on January 5, 2021.
The GEP’s Southeast Regional Node held its Spring 2021 Regional Node Meeting on Friday, April 23, with over 60 in attendance, including students and faculty from constituent states Alabama, Florida, Georgia, and Tennessee. The keynote speaker Whitley Kelley, MS, Certified Genetic Counselor at HudsonAlpha Institute for Biotechnology in Huntsville, AL, provided a fascinating overview of how genomics can be practically applied in careers in genetic counseling (see recording below). Faculty were inspired by the talk to include similar professional development training for students at their own institutions.
Following the keynote address, virtual breakout rooms offered a platform to undergraduate and graduate students to present 5-minute poster sessions on their GEP research projects. Again, faculty response was extremely positive; one professor commented, “Seeing the student presentations with the RNA-Seq provided even more weight to the benefits of the GEP Gene Annotation Curriculum in providing hands-on experiences with multiple data-sets and the feasibility of implementing this curriculum with other scientific questions.”
The two-hour online event served as a brief yet effective forum where students and faculty alike were empowered and motivated to continue active engagement in genomic research.
The Texas/Oklahoma node held their first virtual Regional Node Meeting (RNM) on January 5, 2021. The meeting was organized by several members of the TX/OK node including Lindsey Long and Alisha Howard. The morning session focused on providing training on the Parasitoid Wasps annotation project for current GEP faculty. This session was led by Dr. Nathan Mortimer and attended by seven GEP faculty members.
The afternoon session was open to faculty, postdocs, and students in the TX/OK region who were either affiliated with, or interested in, the GEP project. This session was hosted on the interactive platform Gather Town and was attended by 13 faculty and students from eight different institutions. Dr. Nathan Mortimer kicked off the afternoon with a presentation on his Parasitoid Wasps research project. This talk was followed by a virtual poster session by current and former GEP students. Finally, the GEP faculty hosted a Q&A session for new and prospective GEP faculty members.
