New GEP Tools YouTube Video: Using the RNA-Seq Tracks

A video describing RNA-Seq by GEP Virtual TA Christina Ray Santos is now available on the GEP’s YouTube Channel. We start off with a guided navigation to the GEP UCSC Genome Browser, where GEP student annotators can view their gene models, and then take a step back to talk about how it’s obtained, how scientists can use it to analyze transcriptomes and how they vary between species, organisms, or even cells. This leads into the topic of alternative splicing, which results in unique isoforms that can be used for particular biological tasks. Next, a guide to using your RNA-Seq tracks to their full potential in the GEP UCSC Genome Browser, and finally, a brief summary of what we’ve found out about our example gene to show what we can ultimately take away from all this.

The GEP Tools video series is intended to help GEP students use (and troubleshoot) the annotation tools.

Share:

More Posts

DMV Regional Node Journal Club Series (2024-2025 Academic Year)

The DMV node hosted a series of mini-node events in the form of on-line pedagogy journal club sessions during fall 2024 and spring 2025. They met three times over zoom each semester to discuss papers related to faculty stress, kindness, metacognition, science course support, and undergraduate research.

Pennsylvania Regional Node Meeting – May 23, 2025

The Pennsylvania Node Meeting took place on Friday May 23rd from 12–2pm EST. The title of the event was R Workshop for Beginners. The meeting was virtual and was open to everyone in the GEP due to general interest.

Midwest Regional Node Meeting – May 8, 2025

The Midwest Node hosted a virtual Student Research Symposium on Thursday, May 8, 2025 via Zoom. Nine undergraduate students presented their research on the Pathways and Parrot Projects, with six GEP faculty in attendance. This meeting provided an opportunity for students and faculty to connect through discussion of research projects and for faculty to plan for the future of the Node. Dr. Jennifer Mierisch and Dr. Sarah Justice, Midwest Node Co-Leaders, moderated the sessions.

Send Us Your News or Write a Blog Post

Complete the Submit News Form